Ponraj Prabakaran: search on Z-Library

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1

Antibody Aggregation: Insights from Sequence and Structure

Li, Wei, Prabakaran, Ponraj, Chen, Weizao, Zhu, Zhongyu, Feng, Yang, Dimitrov, Dimiter

Journal:

Year:

2016

Language:

english

File:

PDF, 3.53 MB

english, 2016

2

A model of the ACE2 structure and function as a SARS-CoV receptor

Ponraj Prabakaran, Xiaodong Xiao, Dimiter S Dimitrov

Journal:

Biochemical and Biophysical Research Communications

Year:

2004

Language:

english

File:

PDF, 755 KB

english, 2004

3

A systems approach to HIV-1 vaccines

Ying, Tianlei, Prabakaran, Ponraj, Dimitrov, Dimiter S

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 3.10 MB

english, 2016

4

Expressed antibody repertoires in human cord blood cells: 454 sequencing and IMGT/HighV-QUEST analysis of germline gene usage, junctional diversity, and somatic mutations

Ponraj Prabakaran, Weizao Chen, Maria G. Singarayan, Claudia C. Stewart, Emily Streaker, Yang Feng, Dimiter S. Dimitrov

Journal:

Year:

2012

Language:

english

File:

PDF, 740 KB

english, 2012

5

Thermodynamic databases for proteins and protein–nucleic acid interactions

Akinori Sarai, M. Michael Gromiha, Jianghong An, Ponraj Prabakaran, Samuel Selvaraj, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira

Journal:

Year:

2001

Language:

english

File:

PDF, 464 KB

english, 2001

6

Improved Breadth and Potency of an HIV-1-Neutralizing Human Single-chain Antibody by Random Mutagenesis and Sequential Antigen Panning

Mei-Yun Zhang, Yuuei Shu, Donna Rudolph, Ponraj Prabakaran, Aran F. Labrijn, Michael B. Zwick, Renu B. Lal, Dimiter S. Dimitrov

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 820 KB

english, 2004

7

The Antibody Germline/Maturation Hypothesis, Elicitation of Broadly Neutralizing Antibodies Against HIV-1 and Cord Blood IgM Repertoires

Prabakaran, Ponraj, Chen, Weizao, Dimitrov, Dimiter S.

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

8

Engineered antibody domains with significantly increased transcytosis and half-life in macaques mediated by FcRn

Ying, Tianlei, Wang, Yanping, Feng, Yang, Prabakaran, Ponraj, Gong, Rui, Wang, Lili, Crowder, Karalyne, Dimitrov, Dimiter S

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

9

Origin, diversity, and maturation of human antiviral antibodies analyzed by high-throughput sequencing

Prabakaran, Ponraj, Zhu, Zhongyu, Chen, Weizao, Gong, Rui, Feng, Yang, Streaker, Emily, Dimitrov, Dimiter S.

Journal:

Frontiers in Microbiology

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

10

Potent human monoclonal antibodies against SARS CoV, Nipah and Hendra viruses

Prabakaran, Ponraj, Zhu, Zhongyu, Xiao, Xiaodong, Biragyn, Arya, Dimitrov, Antony S, Broder, Christopher C, Dimitrov, Dimiter S

Journal:

Expert Opinion on Biological Therapy

Year:

2009

Language:

english

File:

PDF, 3.56 MB

english, 2009

11

A broadly neutralizing germline-like human monoclonal antibody against dengue virus envelope domain III

Hu, Dan, Zhu, Zhongyu, Li, Shun, Deng, Yongqiang, Wu, Yanling, Zhang, Nana, Puri, Vinita, Wang, Chunyu, Zou, Peng, Lei, Cheng, Tian, Xiaolong, Wang, Yulu, Zhao, Qi, Li, Wei, Prabakaran, Ponraj, Feng,

Journal:

Year:

2019

File:

PDF, 4.90 MB

2019

12

Germline-like predecessors of broadly neutralizing antibodies lack measurable binding to HIV-1 envelope glycoproteins: Implications for evasion of immune responses and design of vaccine immunogens

Xiaodong Xiao, Weizao Chen, Yang Feng, Zhongyu Zhu, Ponraj Prabakaran, Yanping Wang, Mei-Yun Zhang, Nancy S. Longo, Dimiter S. Dimitrov

Journal:

Biochemical and Biophysical Research Communications

Year:

2009

Language:

english

File:

PDF, 352 KB

english, 2009

13

N-Terminal Truncation of an Isolated Human IgG1 CH2 Domain Significantly Increases Its Stability and Aggregation Resistance

Gong, Rui, Wang, Yanping, Ying, Tianlei, Feng, Yang, Streaker, Emily, Prabakaran, Ponraj, Dimitrov, Dimiter S.

Journal:

Molecular Pharmaceutics

Year:

2013

Language:

english

File:

PDF, 1.65 MB

english, 2013

14

Conjugates of Small Molecule Drugs with Antibodies and Other Proteins

Feng, Yang, Zhu, Zhongyu, Chen, Weizao, Prabakaran, Ponraj, Lin, Kedan, Dimitrov, Dimiter

Journal:

Year:

2014

Language:

english

File:

PDF, 319 KB

english, 2014

15

Rapid elimination of broadly neutralizing antibodies correlates with treatment failure in the acute phase of SHIV infection

Wu, Yanling, Xue, Jing, Wang, Chunyu, Li, Wei, Wang, Lili, Chen, Weizao, Prabakaran, Ponraj, Kong, Desheng, Jin, Yujia, Hu, Dan, Wang, Yulu, Lei, Cheng, Yu, Diao, Tu, Chao, Bardhi, Ariola, Sidorov, Ig

Journal:

Journal of Virology

Year:

2019

Language:

english

File:

PDF, 2.57 MB

english, 2019

16

Structural and Biochemical Analyses of Shikimate Dehydrogenase AroE from Aquifex aeolicus : Implications for the Catalytic Mechanism †,‡

Gan, Jianhua, Wu, Yan, Prabakaran, Ponraj, Gu, Yijun, Li, Yue, Andrykovitch, Michelle, Liu, Hehua, Gong, Yunchen, Yan, Honggao, Ji, Xinhua

Journal:

Year:

2007

Language:

english

File:

PDF, 498 KB

english, 2007

17

Interactions of IgG1 CH2 and CH3 Domains with FcRn

Ying, Tianlei, Ju, Tina W., Wang, Yanping, Prabakaran, Ponraj, Dimitrov, Dimiter S.

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

18

Site-specific antibody-drug conjugation through an engineered glycotransferase and a chemically reactive sugar

Zhu, Zhongyu, Ramakrishnan, Boopathy, Li, Jinyu, Wang, Yanping, Feng, Yang, Prabakaran, Ponraj, Colantonio, Simona, Dyba, Marzena A, Qasba, Pradman K, Dimitrov, Dimiter S

Journal:

Year:

2014

Language:

english

File:

PDF, 843 KB

english, 2014

19

Junctional and allele-specific residues are critical for MERS-CoV neutralization by an exceptionally potent germline-like antibody

Ying, Tianlei, Prabakaran, Ponraj, Du, Lanying, Shi, Wei, Feng, Yang, Wang, Yanping, Wang, Lingshu, Li, Wei, Jiang, Shibo, Dimitrov, Dimiter S., Zhou, Tongqing

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

20

2P118 Latest Developments in ProNIT : Thermodynamic Database for Protein-Nucleic Acid Interactions

Kumar, Shaji M.D., Prabakaran, Ponraj, Uedaira, H., Gromiha, Michael M., Kitajima, K., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2004

Language:

english

File:

PDF, 222 KB

english, 2004

21

Characterization of human IgG repertoires in an acute HIV-1 infection

Weizao Chen, Ponraj Prabakaran, Zhongyu Zhu, Yang Feng, Emily D. Streaker, Dimiter S. Dimitrov

Journal:

Experimental and Molecular Pathology

Year:

2012

Language:

english

File:

PDF, 887 KB

english, 2012

22

Human monoclonal antibodies as candidate therapeutics against emerging viruses and HIV-1

Zhongyu Zhu, Ponraj Prabakaran, Weizao Chen, Christopher C. Broder…

Journal:

Virologica Sinica

Year:

2013

Language:

english

File:

PDF, 314 KB

english, 2013

23

Development of Protein-Ligand Interaction Database

Selvaraj, Samuel, Kubodera, H., Ueno, H., Kamizono, M., Okamoto, M., An, J-H., Prabakaran, Ponraj, Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2000

File:

PDF, 262 KB

2000

24

1M1500 Development and Application of ProNIT, Thermodynamic Database for Protein-Nucleic Acid Interactions

Uedaira, H., Prabakaran, Ponraj, Gromiha, M., Kitajima, K., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2002

File:

PDF, 238 KB

2002

25

A novel paradigm for metal-induced ring flipping in the copper(II) complex of 1,2-bis(N-methylbenzimidazol-2′-yl)benzene triflate

Jayakumar G. Gilbert, Anthony W. Addison, Ponraj Prabakaran, Raymond J. Butcher, Gabriele Bocelli

Journal:

Inorganic Chemistry Communications

Year:

2004

Language:

english

File:

PDF, 386 KB

english, 2004

26

A Unique Cross-reactive HIV-1 Neutralizing CD4i Human Monoclonal Antibody Containing Only a Heavy Chain: Engineering a Domain Antibody and Improvement of Its Potency and Solubility

Mei-Yun Zhang, Samitabh Chakraborti, Ponraj Prabakaran, Vidita Choudhry…

Journal:

Year:

2005

Language:

english

File:

PDF, 69 KB

english, 2005

27

Conformational pseudo-polymorphism and hydrogen bonding: benzthiazide anhydrate and monohydrate, an antihypertensive drug

Prabakaran, Ponraj, Umadevi, Balakrishnan, Panneerselvam, Pathus, Muthiah, Packianathan Thomas, Bocelli, Gabriele, Righi, Lara

Journal:

Year:

2003

Language:

english

File:

PDF, 188 KB

english, 2003

28

A broadly neutralizing germline-like human monoclonal antibody against dengue virus envelope domain III

Hu, Dan, Zhu, Zhongyu, Li, Shun, Deng, Yongqiang, Wu, Yanling, Zhang, Nana, Puri, Vinita, Wang, Chunyu, Zou, Peng, Lei, Cheng, Tian, Xiaolong, Wang, Yulu, Zhao, Qi, Li, Wei, Prabakaran, Ponraj, Feng,

Journal:

Year:

2019

Language:

english

File:

PDF, 4.90 MB

english, 2019

29

Classification of Protein-DNA Complexes Based on Structural Descriptors

Ponraj Prabakaran, Jörg G. Siebers, Shandar Ahmad, M. Michael Gromiha, Maria G. Singarayan, Akinori Sarai

Journal:

Year:

2006

Language:

english

File:

PDF, 425 KB

english, 2006

30

Landscape of Non-canonical Cysteines in Human VH Repertoire Revealed by Immunogenetic Analysis

Prabakaran, Ponraj, Chowdhury, Partha S.

Journal:

Year:

2020

File:

PDF, 3.62 MB

2020

31

Characterization of germline antibody libraries from human umbilical cord blood and selection of monoclonal antibodies to viral envelope glycoproteins: Implications for mechanisms of immune evasion and design of vaccine immunogens

Weizao Chen, Emily D. Streaker, Daniel E. Russ, Yang Feng, Ponraj Prabakaran, Dimiter S. Dimitrov

Journal:

Biochemical and Biophysical Research Communications

Year:

2012

Language:

english

File:

PDF, 644 KB

english, 2012

32

Deep sequencing and Circos analyses of antibody libraries reveal antigen-driven selection of Ig VH genes during HIV-1 infection

Xiao, Madelyne, Prabakaran, Ponraj, Chen, Weizao, Kessing, Bailey, Dimitrov, Dimiter S.

Journal:

Experimental and Molecular Pathology

Year:

2013

Language:

english

File:

PDF, 2.67 MB

english, 2013

33

Antibody-based inhibitors of HIV infection

Choudhry, Vidita, Zhang, Mei-Yun, Dimitrova, Dimana, Prabakaran, Ponraj, Dimitrov, Antony S, Fouts, Timothy R, Dimitrov, Dimiter S

Journal:

Expert Opinion on Biological Therapy

Year:

2006

Language:

english

File:

PDF, 418 KB

english, 2006

34

Recent developments and applications of ProTherm : Thermodynamic database for proteins and mutants

Uedaira, H, Gromiha, M.Michael, An, J, Prabakaran, Ponraj, Selvaraj, Samuel, Kitajima, K, Sarai, A

Journal:

Seibutsu Butsuri

Year:

2001

File:

PDF, 271 KB

2001

35

Thermodynamic database for proteins and mutants : ProTherm Version 2.0

Uedaira, H., Gromiha, M.Michael, An, J., Kono, H., Oohatake, M., Prabakaran, Ponraj, Slevaraj, Samuel, Sarai, A

Journal:

Seibutsu Butsuri

Year:

2000

File:

PDF, 236 KB

2000

36

Thermodynamic Database for Protein-Nucleic Acid Interactions(ProNIT) : Recent Developments

Kumar, Shaji, Prabakaran, Ponraj, Uedaira, H., Gromiha, Michael, Kitajima, K., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2003

File:

PDF, 237 KB

2003

37

Mapping of a Novel H3-Specific Broadly Neutralizing Monoclonal Antibody Targeting the Hemagglutinin Globular Head Isolated from an Elite Influenza Virus-Immunized Donor Exhibiting Serological Breadth

Qiu, Yu, Stegalkina, Svetlana, Zhang, Jianxin, Boudanova, Ekaterina, Park, Anna, Zhou, Yanfeng, Prabakaran, Ponraj, Pougatcheva, Svetlana, Ustyugova, Irina V., Vogel, Thorsten U., Mundle, Sophia T., O

Journal:

Journal of Virology

Year:

2019

File:

PDF, 5.80 MB

2019

38

QSAR analysis of protein-DNA complexes

Sarai, A., Prabakaran, Ponraj, Siebers, Joerg, Ahmad, Shandar, Gromiha, Michael, Kono, H.

Journal:

Seibutsu Butsuri

Year:

2003

File:

PDF, 252 KB

2003

39

2P117 Thermodynamics of protein-DNA complex formation in relation to structure

Uedaira, H., Kono, H., Prabakaran, Ponraj, Kitajima, K., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2004

Language:

english

File:

PDF, 222 KB

english, 2004

40

Editorial: Next-Generation Sequencing of Human Antibody Repertoires for Exploring B-cell Landscape, Antibody Discovery and Vaccine Development

Prabakaran, Ponraj, Glanville, Jacob, Ippolito, Gregory C.

Journal:

Frontiers in Immunology

Year:

2020

File:

PDF, 137 KB

2020

41

The SARS Coronavirus S Glycoprotein Receptor Binding Domain: Fine Mapping and Functional Characterization

Samitabh Chakraborti, Ponraj Prabakaran, Xiaodong Xiao…

Journal:

Virology Journal

Year:

2005

Language:

english

File:

PDF, 1.42 MB

english, 2005

42

3P104Update of ProNIT : Thermodynamic Database for Protein-Nucleic Acid Interactions

Prabakaran, Ponraj, An, J., Gromiha, M.Michael, Selvaraj, Samuel, Uedaira, H., Kono, H., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2001

Language:

english

File:

PDF, 219 KB

english, 2001

43

A Novel Hydrogen-Bonded Duplex Made up of Water Molecules and Halide Ions in the Sandwich Inclusion Structures of (C 10 H 8 N 3 S) + ·X·2H 2 O [X = Cl − , Br − ]

Prabakaran, Ponraj, Murugesan, Somasundaram, Robert, Jebamony Justin, Panneerselvam, Pathus, Muthiah, Packianathan Thomas, Bocelli, Gabriele, Righi, Lara

Journal:

Chemistry Letters

Year:

2000

Language:

english

File:

PDF, 56 KB

english, 2000

44

[Advances in Pharmacology] HIV‐1: Molecular Biology and Pathogenesis Viral Mechanisms, Second Edition Volume 55 || Structure and Function of the HIV Envelope Glycoprotein as Entry Mediator, Vaccine Immunogen, and Target for Inhibitors

Prabakaran, Ponraj

Year:

2007

Language:

english

File:

PDF, 1.19 MB

english, 2007

45

Thermodynamic database for protein-nucleic acid interactions

Prabakaran, Ponraj, An, J., Gromiha, M.Michael, Selvaraj, Samuel, Uedaira, H., Kono, H., Sarai, A.

Journal:

Seibutsu Butsuri

Year:

2000

File:

PDF, 229 KB

2000

46

Structural Mimicry of CD4 by a Cross-reactive HIV-1 Neutralizing Antibody with CDR-H2 and H3 Containing Unique Motifs

Ponraj Prabakaran, Jianhua Gan, You-Qiang Wu, Mei-Yun Zhang, Dimiter S. Dimitrov, Xinhua Ji

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.55 MB

english, 2006

47

454 antibody sequencing - error characterization and correction

Ponraj Prabakaran, Emily Streaker, Weizao Chen, Dimiter S Dimitrov

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 324 KB

english, 2011

48

ChemInform Abstract: Thiabendazolium Nitrate, an Anthelmintic Compound.

Somasundaram Murugesan, Ponraj Prabakaran, Packianathan Thomas Muthiah

Journal:

Year:

1999

File:

PDF, 24 KB

1999

49

Highly efficient selection of epitope specific antibody through competitive yeast display library sorting

Puri, Vinita, Streaker, Emily, Prabakaran, Ponraj, Zhu, Zhongyu, Dimitrov, Dimiter S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

50

Engineered Fc based antibody domains and fragments as novel scaffolds

Ying, Tianlei, Gong, Rui, Ju, Tina W., Prabakaran, Ponraj, Dimitrov, Dimiter S.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

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